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-rw-r--r--flatpak/com.fluorine.manager.desktop22
-rw-r--r--flatpak/com.fluorine.manager.metainfo.xml38
-rw-r--r--flatpak/com.fluorine.manager.pngbin0 -> 51022 bytes
-rw-r--r--flatpak/com.fluorine.manager.yml364
-rwxr-xr-xflatpak/flatpak-install.sh58
-rwxr-xr-xflatpak/fluorine-manager-wrapper.sh109
6 files changed, 591 insertions, 0 deletions
diff --git a/flatpak/com.fluorine.manager.desktop b/flatpak/com.fluorine.manager.desktop
new file mode 100644
index 0000000..ff62c76
--- /dev/null
+++ b/flatpak/com.fluorine.manager.desktop
@@ -0,0 +1,22 @@
+[Desktop Entry]
+Type=Application
+Name=Fluorine Manager
+GenericName=Mod Manager
+Comment=Mod Organizer 2 for Linux - manage your game mods
+Exec=fluorine-manager
+Icon=com.fluorine.manager
+Terminal=false
+Categories=Game;Utility;
+Keywords=mod;organizer;modding;skyrim;fallout;
+MimeType=x-scheme-handler/nxm;
+Actions=create-portable;list-instances;
+
+[Desktop Action create-portable]
+Name=Create Portable Instance
+Exec=fluorine-manager create-portable
+Icon=com.fluorine.manager
+
+[Desktop Action list-instances]
+Name=List Instances
+Exec=fluorine-manager list-instances
+Icon=com.fluorine.manager
diff --git a/flatpak/com.fluorine.manager.metainfo.xml b/flatpak/com.fluorine.manager.metainfo.xml
new file mode 100644
index 0000000..1200d3e
--- /dev/null
+++ b/flatpak/com.fluorine.manager.metainfo.xml
@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<component type="desktop-application">
+ <id>com.fluorine.manager</id>
+ <name>Fluorine Manager</name>
+ <summary>Mod Organizer 2 for Linux</summary>
+ <metadata_license>CC0-1.0</metadata_license>
+ <project_license>GPL-3.0-or-later</project_license>
+
+ <description>
+ <p>
+ Fluorine Manager is a Linux port of Mod Organizer 2, a powerful mod management
+ tool for Bethesda games and other titles. It uses a virtual filesystem to keep
+ your game directory clean while allowing complex mod setups with load order
+ management, conflict resolution, and profile support.
+ </p>
+ <p>Features:</p>
+ <ul>
+ <li>Virtual filesystem - mods never touch your game folder</li>
+ <li>Profile system for different mod configurations</li>
+ <li>Plugin load order management</li>
+ <li>Mod conflict detection and resolution</li>
+ <li>Nexus Mods integration for downloading</li>
+ <li>Proton/Wine prefix management for running Windows games</li>
+ <li>UMU launcher support</li>
+ </ul>
+ </description>
+
+ <launchable type="desktop-id">com.fluorine.manager.desktop</launchable>
+
+ <url type="homepage">https://github.com/ModOrganizer2/modorganizer</url>
+ <url type="bugtracker">https://github.com/ModOrganizer2/modorganizer/issues</url>
+
+ <provides>
+ <binary>fluorine-manager</binary>
+ </provides>
+
+ <content_rating type="oars-1.1" />
+</component>
diff --git a/flatpak/com.fluorine.manager.png b/flatpak/com.fluorine.manager.png
new file mode 100644
index 0000000..3a9fbdd
--- /dev/null
+++ b/flatpak/com.fluorine.manager.png
Binary files differ
diff --git a/flatpak/com.fluorine.manager.yml b/flatpak/com.fluorine.manager.yml
new file mode 100644
index 0000000..a0e2122
--- /dev/null
+++ b/flatpak/com.fluorine.manager.yml
@@ -0,0 +1,364 @@
+app-id: com.fluorine.manager
+runtime: org.kde.Platform
+runtime-version: '6.10'
+sdk: org.kde.Sdk
+sdk-extensions:
+ - org.freedesktop.Sdk.Extension.rust-stable
+command: fluorine-manager
+
+finish-args:
+ - --share=ipc
+ - --share=network
+ - --socket=x11
+ - --socket=wayland
+ - --device=all
+ - --filesystem=home
+ - --filesystem=/run/media:ro
+ - --filesystem=~/.steam:ro
+ - --filesystem=~/.local/share/Steam
+ - --filesystem=~/.var/app/com.valvesoftware.Steam:ro
+ - --talk-name=org.freedesktop.Flatpak
+
+cleanup:
+ - /include
+ - /lib/cmake
+ - /lib/pkgconfig
+ - /share/doc
+ - /share/man
+ - '*.a'
+ - '*.la'
+
+modules:
+ # ── 1. Boost ──
+ - name: boost
+ buildsystem: simple
+ build-commands:
+ - ./bootstrap.sh --prefix=/app --with-libraries=program_options,thread,filesystem,system,locale
+ - ./b2 install -j$FLATPAK_BUILDER_N_JOBS link=shared variant=release
+ sources:
+ - type: archive
+ url: https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz
+ sha256: f55c340aa49763b1925ccf02b2e83f35fdcf634c9d5164a2acb87540173c741d
+
+ # ── 2. spdlog ──
+ - name: spdlog
+ buildsystem: cmake-ninja
+ config-opts:
+ - -DCMAKE_BUILD_TYPE=Release
+ - -DSPDLOG_BUILD_SHARED=ON
+ sources:
+ - type: git
+ url: https://github.com/gabime/spdlog.git
+ tag: v1.15.2
+
+ # ── 3. tinyxml2 ──
+ - name: tinyxml2
+ buildsystem: cmake-ninja
+ config-opts:
+ - -DCMAKE_BUILD_TYPE=Release
+ sources:
+ - type: git
+ url: https://github.com/leethomason/tinyxml2.git
+ tag: 10.0.0
+
+ # ── 4. tomlplusplus ──
+ - name: tomlplusplus
+ buildsystem: cmake-ninja
+ config-opts:
+ - -DCMAKE_BUILD_TYPE=Release
+ sources:
+ - type: git
+ url: https://github.com/marzer/tomlplusplus.git
+ tag: v3.4.0
+
+ # ── 5. libfuse3 ──
+ # Built manually to install fusermount3 without setuid (chown root fails in sandbox).
+ # default_library=both produces libfuse3.a so the VFS helper can link statically.
+ - name: libfuse3
+ buildsystem: simple
+ build-commands:
+ - meson setup _build --prefix=/app -Dexamples=false -Dtests=false -Dutils=true -Ddefault_library=both
+ - ninja -C _build
+ # Install library and headers (skip meson install which runs chown).
+ - ninja -C _build install || true
+ # Ensure fusermount3 is installed even if install_helper.sh failed.
+ - install -Dm755 _build/util/fusermount3 /app/bin/fusermount3 2>/dev/null || true
+ sources:
+ - type: git
+ url: https://github.com/libfuse/libfuse.git
+ tag: fuse-3.16.2
+
+ # ── 6. pybind11 ──
+ - name: pybind11
+ buildsystem: cmake-ninja
+ config-opts:
+ - -DCMAKE_BUILD_TYPE=Release
+ - -DPYBIND11_TEST=OFF
+ sources:
+ - type: git
+ url: https://github.com/pybind/pybind11.git
+ tag: v2.13.6
+
+ # ── 7. libloot ──
+ # libloot has a Rust crate at the root and a C++ cmake project in cpp/.
+ # The Rust static library must be built first, then cmake links against it.
+ - name: libloot
+ buildsystem: simple
+ build-options:
+ append-path: /usr/lib/sdk/rust-stable/bin
+ env:
+ CARGO_HOME: /run/build/libloot/cargo
+ # Network needed for cargo deps and cmake FetchContent (googletest).
+ build-args:
+ - --share=network
+ build-commands:
+ # Build Rust static library first.
+ - cargo build --release
+ # Build the C++ shared library (links against Rust static lib).
+ - |
+ cmake -S cpp -B cpp/build -G Ninja \
+ -DCMAKE_BUILD_TYPE=Release \
+ -DBUILD_SHARED_LIBS=ON \
+ -DLIBLOOT_INSTALL_DOCS=OFF \
+ -DCMAKE_INSTALL_PREFIX=/app
+ - cmake --build cpp/build --parallel
+ - cmake --install cpp/build
+ # Create pkg-config metadata.
+ - mkdir -p /app/lib/pkgconfig
+ - |
+ printf '%s\n' \
+ 'prefix=/app' \
+ 'exec_prefix=${prefix}' \
+ 'libdir=${prefix}/lib' \
+ 'includedir=${prefix}/include' \
+ '' \
+ 'Name: libloot' \
+ 'Description: LOOT C++ API library' \
+ 'Version: 0.29.0' \
+ 'Libs: -L${libdir} -lloot' \
+ 'Cflags: -I${includedir}' \
+ > /app/lib/pkgconfig/libloot.pc
+ sources:
+ - type: git
+ url: https://github.com/loot/libloot.git
+ branch: master
+
+ # ── 8. icoutils ──
+ - name: icoutils
+ buildsystem: autotools
+ build-options:
+ # icoutils 0.32.3 uses K&R-style () declarations that GCC 14+ rejects.
+ cflags: -std=gnu17
+ sources:
+ - type: archive
+ url: https://download.savannah.gnu.org/releases/icoutils/icoutils-0.32.3.tar.bz2
+ sha256: 17abe02d043a253b68b47e3af69c9fc755b895db68fdc8811786125df564c6e0
+
+ # ── 9. cabextract ──
+ # Required by winetricks for extracting Windows cab archives.
+ - name: cabextract
+ buildsystem: autotools
+ sources:
+ - type: archive
+ url: https://www.cabextract.org.uk/cabextract-1.11.tar.gz
+ sha256: b5546db1155e4c718ff3d4b278573604f30dd64c3c5bfd4657cd089b823a3ac6
+
+ # ── 10. Portable Python runtime ──
+ # Pre-built Python used as the embedded interpreter for MO2's Python plugins.
+ # pip packages are installed via network during build (--share=network).
+ - name: portable-python
+ buildsystem: simple
+ build-options:
+ build-args:
+ - --share=network
+ build-commands:
+ # Extract, trim, symlink, and install pip packages in one step
+ # (each build-command runs in its own shell).
+ - |
+ set -e
+ mkdir -p /app/lib/fluorine/python
+ unzip portable-python.zip -d /tmp/pp
+ PP_DIR="$(find /tmp/pp -maxdepth 1 -mindepth 1 -type d | head -1)"
+ cp -a "${PP_DIR}/." /app/lib/fluorine/python/
+ rm -rf /tmp/pp
+ # Versioned soname symlink (pybind11 links against libpython3.13.so.1.0).
+ if [ -f /app/lib/fluorine/python/lib/libpython3.13.so ] && \
+ [ ! -f /app/lib/fluorine/python/lib/libpython3.13.so.1.0 ]; then
+ ln -sf libpython3.13.so /app/lib/fluorine/python/lib/libpython3.13.so.1.0
+ fi
+ # Trim test suites and unnecessary files.
+ rm -rf /app/lib/fluorine/python/lib/python3.13/test \
+ /app/lib/fluorine/python/lib/python3.13/unittest/test \
+ /app/lib/fluorine/python/lib/python3.13/idlelib \
+ /app/lib/fluorine/python/lib/python3.13/tkinter \
+ /app/lib/fluorine/python/lib/python3.13/turtledemo \
+ /app/lib/fluorine/python/include \
+ /app/lib/fluorine/python/share \
+ 2>/dev/null || true
+ find /app/lib/fluorine/python -type d -name "__pycache__" -exec rm -rf {} + 2>/dev/null || true
+ find /app/lib/fluorine/python -name "*.pyc" -delete 2>/dev/null || true
+ # Install pip packages (PyQt6 for plugin UI, psutil, vdf).
+ /app/lib/fluorine/python/bin/python3 -m ensurepip --default-pip 2>/dev/null || true
+ /app/lib/fluorine/python/bin/python3 -m pip install --no-cache-dir PyQt6 psutil vdf
+ sources:
+ - type: file
+ url: https://github.com/bjia56/portable-python/releases/download/cpython-v3.13.9-build.0/python-headless-3.13.9-linux-x86_64.zip
+ sha256: d03507d107da86d74aa38bbc4957b8db5753de567024c5724a254909ae6b86d6
+ dest-filename: portable-python.zip
+
+ # ── 10. Fluorine Manager (main project) ──
+ - name: fluorine
+ buildsystem: simple
+ build-options:
+ append-path: /usr/lib/sdk/rust-stable/bin
+ env:
+ CARGO_HOME: /run/build/fluorine/cargo
+ PYTHONPATH: /app/lib/python3/dist-packages
+ # Network needed for FetchContent (7zip, etc.) and cargo deps.
+ build-args:
+ - --share=network
+ build-commands:
+ # Install sip build tools into /app (SDK /usr is read-only).
+ - /usr/bin/python3 -m pip install --target=/app/lib/python3/dist-packages sip
+
+ # ── Configure and build ──
+ - |
+ cmake -S . -B _build -G Ninja \
+ -DCMAKE_BUILD_TYPE=Release \
+ -DCMAKE_PREFIX_PATH=/app \
+ -DPython3_ROOT_DIR=/app/lib/fluorine/python \
+ -DPython3_EXECUTABLE=/app/lib/fluorine/python/bin/python3 \
+ -DBUILD_PLUGIN_PYTHON=ON
+ - cmake --build _build --parallel
+
+ # ── Create output layout ──
+ - mkdir -p /app/lib/fluorine/plugins /app/lib/fluorine/dlls /app/lib/fluorine/lib
+
+ # Main binary.
+ - cp -f _build/src/src/ModOrganizer /app/lib/fluorine/ModOrganizer-core
+
+ # umu-run (patch and repackage if present).
+ - |
+ if [ -f _build/src/src/umu-run ]; then
+ UMU_PATCH_DIR="$(mktemp -d)"
+ cd "${UMU_PATCH_DIR}"
+ python3 << 'PATCHEOF'
+ import zipfile, pathlib
+ zf = zipfile.ZipFile('/run/build/fluorine/_build/src/src/umu-run')
+ zf.extractall('src')
+ run_py = pathlib.Path('src/umu/umu_run.py')
+ src = run_py.read_text()
+ old1 = ' env["STEAM_COMPAT_INSTALL_PATH"] = os.environ.get("STEAM_COMPAT_INSTALL_PATH", "")'
+ new1 = (old1
+ + '\n env["STEAM_COMPAT_CLIENT_INSTALL_PATH"] = os.environ.get('
+ + '\n "STEAM_COMPAT_CLIENT_INSTALL_PATH", ""'
+ + '\n )')
+ if old1 in src and 'STEAM_COMPAT_CLIENT_INSTALL_PATH"] = os.environ' not in src:
+ src = src.replace(old1, new1)
+ old2 = ' os.environ[key] = val'
+ new2 = (old2
+ + '\n\n # GE-Proton treats games with UMU_ID as non-Steam titles and skips'
+ + '\n # the steam.exe DRM bridge. Remove it for Steam games.'
+ + '\n if "UMU_ID" in os.environ and env.get("SteamAppId", "0") != "0":'
+ + '\n del os.environ["UMU_ID"]')
+ if old2 in src and 'del os.environ["UMU_ID"]' not in src:
+ src = src.replace(old2, new2, 1)
+ run_py.write_text(src)
+ PATCHEOF
+ python3 -m zipapp src -o /app/lib/fluorine/umu-run -p '/usr/bin/env python3'
+ chmod +x /app/lib/fluorine/umu-run
+ cd /run/build/fluorine
+ rm -rf "${UMU_PATCH_DIR}"
+ fi
+
+ # VFS helper (standalone, runs on host for Flatpak FUSE support).
+ # Statically linked against libfuse3 — no runtime deps beyond glibc.
+ - test -f _build/src/src/mo2-vfs-helper && cp -f _build/src/src/mo2-vfs-helper /app/lib/fluorine/ || true
+
+ # lootcli.
+ - test -f _build/libs/lootcli/src/lootcli && cp -f _build/libs/lootcli/src/lootcli /app/lib/fluorine/ || true
+
+ # icoutils (symlink from /app/bin where the icoutils module installed them).
+ - ln -sf /app/bin/wrestool /app/lib/fluorine/wrestool
+ - ln -sf /app/bin/icotool /app/lib/fluorine/icotool
+ - ln -sf /app/bin/fusermount3 /app/lib/fluorine/fusermount3
+ - ln -sf /app/bin/cabextract /app/lib/fluorine/cabextract
+
+ # fluorine-manager CLI helper.
+ - test -f src/fluorine-manager && cp -f src/fluorine-manager /app/lib/fluorine/ || true
+
+ # MO2 plugins (.so).
+ - |
+ find _build/libs -type f \( \
+ -name "libgame_*.so" -o \
+ -name "libinstaller_*.so" -o \
+ -name "libpreview_*.so" -o \
+ -name "libdiagnose_*.so" -o \
+ -name "libcheck_*.so" -o \
+ -name "libtool_*.so" -o \
+ -name "libinieditor.so" -o \
+ -name "libinibakery.so" -o \
+ -name "libbsa_extractor.so" -o \
+ -name "libbsa_packer.so" -o \
+ -name "libproxy.so" \
+ \) -exec cp -f {} /app/lib/fluorine/plugins/ \;
+
+ # Python plugin payload.
+ - |
+ for f in libplugin_python.so lzokay.py winreg.py pyCfg.py \
+ DDSPreview.py Form43Checker.py ScriptExtenderPluginChecker.py; do
+ [ -f "_build/src/src/plugins/${f}" ] && cp -f "_build/src/src/plugins/${f}" /app/lib/fluorine/plugins/
+ done
+ for d in basic_games data libs dlls; do
+ [ -d "_build/src/src/plugins/${d}" ] && cp -a "_build/src/src/plugins/${d}" /app/lib/fluorine/plugins/
+ done
+ rm -f /app/lib/fluorine/plugins/FNIS*.py
+
+ # 7z runtime.
+ - |
+ if [ -f _build/src/src/dlls/7z.so ]; then
+ cp -f _build/src/src/dlls/7z.so /app/lib/fluorine/dlls/7z.so
+ cp -f _build/src/src/dlls/7z.so /app/lib/fluorine/dlls/7zip.dll
+ fi
+
+ # Project shared libraries.
+ - cp -f _build/libs/uibase/src/libuibase.so /app/lib/fluorine/lib/
+ - cp -f _build/libs/libbsarch/liblibbsarch.so /app/lib/fluorine/lib/
+ - cp -f _build/libs/archive/src/libarchive.so /app/lib/fluorine/lib/
+ - test -f _build/libs/plugin_python/src/runner/librunner.so && cp -f _build/libs/plugin_python/src/runner/librunner.so /app/lib/fluorine/lib/ || true
+ - test -f libs/bsa_ffi/target/release/libbsa_ffi.so && cp -f libs/bsa_ffi/target/release/libbsa_ffi.so /app/lib/fluorine/lib/ || true
+ - test -f libs/nak_ffi/target/release/libnak_ffi.so && cp -f libs/nak_ffi/target/release/libnak_ffi.so /app/lib/fluorine/lib/ || true
+
+ # Boost libraries (from /app/lib where the boost module installed them).
+ - cp -Lf /app/lib/libboost_program_options.so* /app/lib/fluorine/lib/ 2>/dev/null || true
+ - cp -Lf /app/lib/libboost_thread.so* /app/lib/fluorine/lib/ 2>/dev/null || true
+
+ # libloot (from /app/lib where the libloot module installed it).
+ - |
+ if [ -f /app/lib/libloot.so.0 ]; then
+ cp -Lf /app/lib/libloot.so.0 /app/lib/fluorine/lib/
+ ln -sf libloot.so.0 /app/lib/fluorine/lib/libloot.so
+ elif [ -f /app/lib/libloot.so ]; then
+ cp -Lf /app/lib/libloot.so /app/lib/fluorine/lib/
+ fi
+
+ # Build-tree Python plugin payload.
+ - test -d _build/src/src/python && cp -a _build/src/src/python/. /app/lib/fluorine/python/ || true
+
+ # Strip binaries.
+ - strip --strip-unneeded /app/lib/fluorine/ModOrganizer-core 2>/dev/null || true
+ - find /app/lib/fluorine/plugins -name "*.so" -exec strip --strip-unneeded {} \; 2>/dev/null || true
+ - find /app/lib/fluorine/dlls \( -name "*.so" -o -name "*.dll" \) -exec strip --strip-unneeded {} \; 2>/dev/null || true
+ - find /app/lib/fluorine/lib -name "*.so*" -exec strip --strip-unneeded {} \; 2>/dev/null || true
+ - test -f /app/lib/fluorine/lootcli && strip --strip-unneeded /app/lib/fluorine/lootcli 2>/dev/null || true
+ - test -f /app/lib/fluorine/mo2-vfs-helper && strip --strip-unneeded /app/lib/fluorine/mo2-vfs-helper 2>/dev/null || true
+
+ # Install wrapper script, desktop file, metainfo, and icon.
+ - install -Dm755 flatpak/fluorine-manager-wrapper.sh /app/bin/fluorine-manager
+ - install -Dm644 flatpak/com.fluorine.manager.desktop /app/share/applications/com.fluorine.manager.desktop
+ - install -Dm644 flatpak/com.fluorine.manager.metainfo.xml /app/share/metainfo/com.fluorine.manager.metainfo.xml
+ - install -Dm644 flatpak/com.fluorine.manager.png /app/share/icons/hicolor/256x256/apps/com.fluorine.manager.png
+
+ sources:
+ - type: dir
+ path: ..
diff --git a/flatpak/flatpak-install.sh b/flatpak/flatpak-install.sh
new file mode 100755
index 0000000..e52497e
--- /dev/null
+++ b/flatpak/flatpak-install.sh
@@ -0,0 +1,58 @@
+#!/usr/bin/env bash
+# Build the Fluorine Manager Flatpak.
+#
+# Usage:
+# cd flatpak && bash flatpak-install.sh # build & install locally
+# cd flatpak && bash flatpak-install.sh bundle # build a .flatpak file to share
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
+PROJECT_DIR="$(dirname "${SCRIPT_DIR}")"
+MANIFEST="${SCRIPT_DIR}/com.fluorine.manager.yml"
+APP_ID="com.fluorine.manager"
+BUILD_DIR="${PROJECT_DIR}/.flatpak-build"
+MODE="${1:-install}"
+
+# ── Ensure flathub remote exists ──
+if ! flatpak remote-list --user | grep -q flathub; then
+ echo "Adding flathub remote..."
+ flatpak remote-add --user --if-not-exists flathub https://flathub.org/repo/flathub.flatpakrepo
+fi
+
+# ── Install required Flatpak runtime and SDK ──
+echo "Installing KDE Platform and SDK (may take a while on first run)..."
+flatpak install --user --noninteractive flathub org.kde.Platform//6.10 org.kde.Sdk//6.10
+
+echo "Installing Rust SDK extension..."
+flatpak install --user --noninteractive flathub org.freedesktop.Sdk.Extension.rust-stable//25.08
+
+cd "${PROJECT_DIR}"
+
+if [ "${MODE}" = "bundle" ]; then
+ # ── Build a distributable .flatpak file ──
+ echo ""
+ echo "Building Flatpak bundle (this may take a while)..."
+ flatpak-builder --repo="${PROJECT_DIR}/flatpak-repo" --force-clean \
+ "${BUILD_DIR}" "${MANIFEST}"
+ flatpak build-bundle "${PROJECT_DIR}/flatpak-repo" "${PROJECT_DIR}/fluorine-manager.flatpak" "${APP_ID}"
+ BUNDLE_SIZE="$(du -sh fluorine-manager.flatpak | cut -f1)"
+ echo ""
+ echo "=== Bundle created: fluorine-manager.flatpak (${BUNDLE_SIZE}) ==="
+ echo ""
+ echo "Share this file with testers. They install it with:"
+ echo " flatpak install --user fluorine-manager.flatpak"
+else
+ # ── Build and install locally ──
+ echo ""
+ echo "Building and installing Flatpak locally (this may take a while)..."
+ flatpak-builder --install --user --force-clean \
+ "${BUILD_DIR}" "${MANIFEST}"
+ echo ""
+ echo "=== Flatpak installed successfully ==="
+fi
+
+echo ""
+echo "Usage:"
+echo " flatpak run ${APP_ID} # launch GUI"
+echo " flatpak run ${APP_ID} create-portable --name myinstance --game falloutnv"
+echo " flatpak run ${APP_ID} list-instances"
diff --git a/flatpak/fluorine-manager-wrapper.sh b/flatpak/fluorine-manager-wrapper.sh
new file mode 100755
index 0000000..fabe535
--- /dev/null
+++ b/flatpak/fluorine-manager-wrapper.sh
@@ -0,0 +1,109 @@
+#!/bin/bash
+# Flatpak wrapper for Fluorine Manager (MO2 Linux)
+# Sets up a writable overlay so users can add custom plugins while still
+# loading the bundled ones from the read-only /app tree.
+#
+# For portable instances (--instance /path), the overlay is created INSIDE the
+# instance directory so each portable install is fully self-contained.
+# For the global instance (no --instance), a shared overlay is used.
+
+BUNDLED="/app/lib/fluorine"
+
+# ── Detect --instance argument ──
+# If launching a portable instance, use its directory as the overlay target.
+INSTANCE_DIR=""
+PREV=""
+for arg in "$@"; do
+ if [ "$PREV" = "--instance" ] || [ "$PREV" = "-i" ]; then
+ INSTANCE_DIR="$arg"
+ break
+ fi
+ PREV="$arg"
+done
+
+if [ -n "$INSTANCE_DIR" ] && [ -d "$INSTANCE_DIR" ]; then
+ # Portable instance: overlay goes into the instance directory itself.
+ # Everything is self-contained: mods, profiles, plugins, dlls, libs.
+ USER_DIR="$INSTANCE_DIR"
+else
+ # Global instance: shared overlay at ~/.local/share/fluorine/
+ USER_DIR="${XDG_DATA_HOME:-$HOME/.local/share}/fluorine"
+fi
+
+# ── Create writable overlay with symlinks to bundled files ──
+# This lets MO2 load bundled plugins AND any custom ones the user drops in.
+# Existing files are never overwritten (user overrides take priority).
+setup_overlay() {
+ mkdir -p "${USER_DIR}/plugins" "${USER_DIR}/dlls" "${USER_DIR}/lib"
+
+ # Symlink bundled plugins (skip existing - user overrides take priority)
+ for f in "${BUNDLED}/plugins/"*; do
+ [ -e "$f" ] || continue
+ local base="$(basename "$f")"
+ local target="${USER_DIR}/plugins/${base}"
+ [ -e "$target" ] || [ -L "$target" ] || ln -sf "$f" "$target"
+ done
+
+ # Symlink bundled dlls
+ for f in "${BUNDLED}/dlls/"*; do
+ [ -e "$f" ] || continue
+ local base="$(basename "$f")"
+ local target="${USER_DIR}/dlls/${base}"
+ [ -e "$target" ] || [ -L "$target" ] || ln -sf "$f" "$target"
+ done
+
+ # Symlink bundled libs
+ for f in "${BUNDLED}/lib/"*; do
+ [ -e "$f" ] || continue
+ local base="$(basename "$f")"
+ local target="${USER_DIR}/lib/${base}"
+ [ -e "$target" ] || [ -L "$target" ] || ln -sf "$f" "$target"
+ done
+
+ # Symlink other bundled files (binaries, tools) directly
+ for f in ModOrganizer-core lootcli wrestool icotool fusermount3 cabextract; do
+ [ -e "${BUNDLED}/$f" ] || continue
+ [ -e "${USER_DIR}/$f" ] || [ -L "${USER_DIR}/$f" ] || ln -sf "${BUNDLED}/$f" "${USER_DIR}/$f"
+ done
+
+ # umu-run must be a real copy (not symlink to /app/) because it runs on
+ # the host via flatpak-spawn --host, where /app/ doesn't exist.
+ # Remove any stale symlink first (cp -f follows symlinks, won't replace them).
+ if [ -e "${BUNDLED}/umu-run" ]; then
+ rm -f "${USER_DIR}/umu-run"
+ cp "${BUNDLED}/umu-run" "${USER_DIR}/umu-run"
+ chmod +x "${USER_DIR}/umu-run"
+ fi
+
+ # VFS helper must be a real binary copy (not a symlink to /app/) because
+ # it runs on the host via flatpak-spawn --host, where /app/ doesn't exist.
+ # libfuse3 is statically linked, so no extra .so files needed.
+ VFS_HELPER_DIR="${XDG_DATA_HOME:-$HOME/.local/share}/fluorine/bin"
+ if [ -e "${BUNDLED}/mo2-vfs-helper" ]; then
+ mkdir -p "${VFS_HELPER_DIR}"
+ cp -f "${BUNDLED}/mo2-vfs-helper" "${VFS_HELPER_DIR}/mo2-vfs-helper"
+ chmod +x "${VFS_HELPER_DIR}/mo2-vfs-helper"
+ fi
+}
+
+setup_overlay
+
+export PATH="${USER_DIR}:${BUNDLED}:${PATH}"
+export LD_LIBRARY_PATH="${USER_DIR}/lib:${BUNDLED}/lib:${BUNDLED}/python/lib:${LD_LIBRARY_PATH:-}"
+
+# MO2 resolves plugins/dlls relative to MO2_BASE_DIR (or basePath()).
+# Point it at the overlay so custom plugins are found.
+export MO2_BASE_DIR="${USER_DIR}"
+export MO2_PLUGINS_DIR="${USER_DIR}/plugins"
+export MO2_DLLS_DIR="${USER_DIR}/dlls"
+export MO2_PYTHON_DIR="${BUNDLED}/python"
+
+# Do NOT set PYTHONHOME globally -- it leaks into child processes (umu-run,
+# Proton, winetricks) and breaks their Python. The plugin_python runner reads
+# MO2_PYTHON_DIR and sets PYTHONHOME internally before loading the interpreter.
+unset PYTHONHOME PYTHONPATH PYTHONNOUSERSITE
+
+# Qt6 plugins from KDE runtime.
+export QT_PLUGIN_PATH="/usr/lib/plugins"
+
+exec "${BUNDLED}/ModOrganizer-core" "$@"